show methods

show,AnnotParam-method

show,BamParam-method

show,RNAseq-method

show,RnaSeqParam-method

An object of the <code><links4class>AnnotParam</links4class></code>, 
<code><links4class>BamParam</links4class></code>, <code><links4class>RnaSeqParam</links4class></code> or 
<code><links4class>RNAseq</links4class></code> class

object

Display the content of a <code><links4class>RNAseq</links4class></code>, 
<code><links4class>AnnotParam</links4class></code>, <code><links4class>BamParam</links4class></code> or 
<code><links4class>RnaSeqParam</links4class></code> object.

methods

Calculates the coverage of high-throughput short-reads against
    a genome of reference and summarizes it per feature of interest (e.g. exon,
    gene, transcript). The data can be normalized as 'RPKM' or by the 'DESeq'
    or 'edgeR' package.

Nicolas Delhomme

easyRNASeq

Count summarization and normalization for RNA-Seq data

show methods function

An object of the <code><linkS4class>AnnotParam</linkS4class></code>, 
<code><linkS4class>BamParam</linkS4class></code>, <code><linkS4class>RnaSeqParam</linkS4class></code> or 
<code><linkS4class>RNAseq</linkS4class></code> class

Display the content of a <code><linkS4class>RNAseq</linkS4class></code>, 
<code><linkS4class>AnnotParam</linkS4class></code>, <code><linkS4class>BamParam</linkS4class></code> or 
<code><linkS4class>RnaSeqParam</linkS4class></code> object.

show methods: Display the content of classes from the easyRNASeq package.

Description

Usage

Arguments